DAS publications

From BioDAS

The following DAS related papers have been published:

If you know of any others, please add them

1. Dowell RD, Jokerst RM, Day A, Eddy SR, and Stein L. The distributed annotation system. BMC Bioinformatics 2001; 2 7. pmid:11667947. PubMed HubMed [dowell2001]
2. Prli? A, Down TA, and Hubbard TJ. Adding some SPICE to DAS. Bioinformatics 2005 Sep 1; 21 Suppl 2 ii40-1. doi:10.1093/bioinformatics/bti1106 pmid:16204122. PubMed HubMed [prlic2005]
3. Olason PI. Integrating protein annotation resources through the Distributed Annotation System. Nucleic Acids Res 2005 Jul 1; 33(Web Server issue) W468-70. doi:10.1093/nar/gki463 pmid:15980514. PubMed HubMed [olason2005]
4. Jones P, Vinod N, Down T, Hackmann A, Kahari A, Kretschmann E, Quinn A, Wieser D, Hermjakob H, and Apweiler R. Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinformatics 2005 Jul 15; 21(14) 3198-9. doi:10.1093/bioinformatics/bti506 pmid:15905273. PubMed HubMed [jones2005]
5. Birney E, Andrews D, Caccamo M, Chen Y, Clarke L, Coates G, Cox T, Cunningham F, Curwen V, Cutts T, Down T, Durbin R, Fernandez-Suarez XM, Flicek P, Gräf S, Hammond M, Herrero J, Howe K, Iyer V, Jekosch K, Kähäri A, Kasprzyk A, Keefe D, Kokocinski F, Kulesha E, London D, Longden I, Melsopp C, Meidl P, Overduin B, Parker A, Proctor G, Prlic A, Rae M, Rios D, Redmond S, Schuster M, Sealy I, Searle S, Severin J, Slater G, Smedley D, Smith J, Stabenau A, Stalker J, Trevanion S, Ureta-Vidal A, Vogel J, White S, Woodwark C, and Hubbard TJ. Ensembl 2006. Nucleic Acids Res 2006 Jan 1; 34(Database issue) D556-61. doi:10.1093/nar/gkj133 pmid:16381931. PubMed HubMed [birney2006]
6. Hubbard TJ, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Fitzgerald S, Fernandez-Banet J, Graf S, Haider S, Hammond M, Herrero J, Holland R, Howe K, Howe K, Johnson N, Kahari A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Melsopp C, Megy K, Meidl P, Ouverdin B, Parker A, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Severin J, Slater G, Smedley D, Spudich G, Trevanion S, Vilella A, Vogel J, White S, Wood M, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Flicek P, Kasprzyk A, Proctor G, Searle S, Smith J, Ureta-Vidal A, and Birney E. Ensembl 2007. Nucleic Acids Res 2007 Jan; 35(Database issue) D610-7. doi:10.1093/nar/gkl996 pmid:17148474. PubMed HubMed [hubbard2007]
7. Finn RD, Stalker JW, Jackson DK, Kulesha E, Clements J, and Pettett R. ProServer: a simple, extensible Perl DAS server. Bioinformatics 2007 Jun 15; 23(12) 1568-70. doi:10.1093/bioinformatics/btl650 pmid:17237073. PubMed HubMed [finn2007]
8. Andreeva A, Prli? A, Hubbard TJ, and Murzin AG. SISYPHUS--structural alignments for proteins with non-trivial relationships. Nucleic Acids Res 2007 Jan; 35(Database issue) D253-9. doi:10.1093/nar/gkl746 pmid:17068077. PubMed HubMed [andreeva2007]
9. Prli? A, Down TA, Kulesha E, Finn RD, Kähäri A, and Hubbard TJ. Integrating sequence and structural biology with DAS. BMC Bioinformatics 2007 Sep 12; 8 333. doi:10.1186/1471-2105-8-333 pmid:17850653. PubMed HubMed [prlic2007]
10. Kryshtafovych A, Prlic A, Dmytriv Z, Daniluk P, Milostan M, Eyrich V, Hubbard T, and Fidelis K. New tools and expanded data analysis capabilities at the Protein Structure Prediction Center. Proteins 2007; 69 Suppl 8 19-26. doi:10.1002/prot.21653 pmid:17705273. PubMed HubMed [kryshtafovych2007]
11. Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, Chen Y, Clarke L, Coates G, Cunningham F, Cutts T, Down T, Dyer SC, Eyre T, Fitzgerald S, Fernandez-Banet J, Gräf S, Haider S, Hammond M, Holland R, Howe KL, Howe K, Johnson N, Jenkinson A, Kähäri A, Keefe D, Kokocinski F, Kulesha E, Lawson D, Longden I, Megy K, Meidl P, Overduin B, Parker A, Pritchard B, Prlic A, Rice S, Rios D, Schuster M, Sealy I, Slater G, Smedley D, Spudich G, Trevanion S, Vilella AJ, Vogel J, White S, Wood M, Birney E, Cox T, Curwen V, Durbin R, Fernandez-Suarez XM, Herrero J, Hubbard TJ, Kasprzyk A, Proctor G, Smith J, Ureta-Vidal A, and Searle S. Ensembl 2008. Nucleic Acids Res 2008 Jan; 36(Database issue) D707-14. doi:10.1093/nar/gkm988 pmid:18000006. PubMed HubMed [flicek2008]
12. Jenkinson AM, Albrecht M, Birney E, Blankenburg H, Down T, Finn RD, Hermjakob H, Hubbard TJ, Jimenez RC, Jones P, Kähäri A, Kulesha E, Macías JR, Reeves GA, and Prlic A. Integrating biological data - the Distributed Annotation System. BMC Bioinformatics 2008 Jul 22; 9 Suppl 8 S3. doi:10.1186/1471-2105-9-S8-S3 pmid:18673527. PubMed HubMed [jenkinson2008]
13. Jimenez RC, Quinn AF, Garcia A, Labarga A, O'Neill K, Martinez F, Salazar GA, and Hermjakob H. Dasty2, an Ajax protein DAS client. Bioinformatics 2008 Sep 15; 24(18) 2119-21. doi:10.1093/bioinformatics/btn387 pmid:18694895. PubMed HubMed [jimenez2008]

All Medline abstracts: PubMed HubMed